8/19/2023 0 Comments Anaconda update packages![]() Shouldn't conda automatically prevent this? because the documentation for install says: " installs a set of packages consistent with those specifications and compatible with the underlying environment.There are other packages that are also updated and some of them still downloading the same version like certifi-2023.5.7! Numpy 1.23.5 -> is updated to numpy-1.24.3 (and tensor-flow have problems with this version)Ĭharset-normalizer is also changed to charset-normalizer-2.0.4 (which also causes issues) the problem is that some packages are updated, which are inconsistent with the current version of tensorflow (for instance) : after a while, i wanted to install scikit-learn (with conda in the same environment), however tensorflow stopped working. Please also note that there is a website about Biopython, which contains an informative wiki as well.I have installed tensorflow (the last version), and it works perfectly. ![]() Therefore, you do not necessarily need Anaconda to use it. Please note that Biopython is also available as a stand-alone module. ![]() If that gives no error, Biopython is working and you're good to go. ![]() If you just want to get a short list of every single installed program in the environment, type inįurther on, we will show you how to set up an environment including a package and a specific version of Python, based on the instructions above.Ĭreating the environment bio including the program Biopython with Python 3.5Ĭonda create -name bio biopython python=3.5 To install one of the shown packages, just type in If there is an asterisk in front of one of the displayed version numbers, this indicates that this version is already installed. If you want to find out whether you have a specific package installed, or if so, which version is installed, you can do this using the search function within the individual environments.Īnd you will get a list of all the applying packages available from the Anaconda repository. In this example, Python should show 3.5 as the installed version: If you want to use a different version, you can create a new environment and specify the version of Python that you want. When you create a new environment, conda installs the same Python version which had been installed when Anaconda was installed. To remove one of the environments, type in: The active environment is marked with an asterisk (*). To see a list of all your environments, type: Subsequent, you must activate the new environment by typing:įrom now on, every conda command will only affect the activated environment until it gets deactivated again. To create a new environment and install a package, type in It is not advisable to put programs into your base environment, which is the default one named 'base'. To keep your programs isolated, you should create separate environments for each application. Not you can start working with the conda commands.Ĭreating Environments and Installing Packages To work with Anaconda, you have to enable the required modules first. įor more detailed information about the particular packages, type in the whole version, e.g.:įor the version in this example, which comes with conda v4.5.5, you would have to load the environment module hpc-env/6.4 first: These versions are installed and and currently available. You can check for available versions with the spider command you need a specific version).Ĭonda is part of Anaconda3 as well as Miniconda3 which differ only in that Miniconda3 is provided without GUI and with no pre-installed packages. You can use Anaconda to quickly install software in your $HOME-directory in case it is not installed already (i.e. Conda lets you find and install packages. Conda is maintained by Continuum Analytics.
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